FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index12_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20905260 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 5278360 | 2.8583164 | 5.1211524 | 2 |
| CCAGG | 4399900 | 2.6143382 | 5.373436 | 1 |
| CCTGG | 4413670 | 2.6079361 | 5.999052 | 1 |
| GAAGA | 4465540 | 2.5500484 | 5.1195736 | 2 |
| CTTCT | 4568690 | 2.5315235 | 5.405506 | 1 |
| AAGAA | 4509915 | 2.5079055 | 5.078912 | 2 |
| CTGGA | 4222690 | 2.4460428 | 8.578897 | 1 |
| TCCAG | 4107605 | 2.3634927 | 5.3076997 | 2 |
| CTCCT | 4073695 | 2.3153834 | 7.058845 | 1 |
| CTGGG | 3811215 | 2.2670958 | 8.114968 | 1 |
| CAGGA | 3846550 | 2.2406192 | 5.4837103 | 1 |
| CTTCA | 3959165 | 2.206052 | 5.5399575 | 1 |
| CCCAG | 3687815 | 2.176601 | 6.979046 | 1 |
| CTCCA | 3800320 | 2.1720831 | 7.3488398 | 1 |
| CAGAA | 3677620 | 2.0860848 | 5.062055 | 1 |
| CTCTG | 3540580 | 2.0259006 | 6.1612844 | 1 |
| CTGGC | 3212635 | 1.8982722 | 5.2758145 | 1 |
| TGGAA | 3273080 | 1.8586994 | 5.1238217 | 2 |
| CTGAA | 3272945 | 1.8462139 | 5.53399 | 1 |
| CTCAG | 3021070 | 1.7383066 | 5.9556866 | 1 |
| CTTTG | 3064865 | 1.7096645 | 5.052603 | 1 |
| CTTGG | 2846275 | 1.6395695 | 5.3260665 | 1 |